You are currently on a failover version of the Materials Cloud Archive hosted at CINECA, Italy.
Click here to access the main Materials Cloud Archive.
Note: If the link above redirects you to this page, it means that the Archive is currently offline due to maintenance. We will be back online as soon as possible.
This version is read-only: you can view published records and download files, but you cannot create new records or make changes to existing ones.

Structural transitions of calcium carbonate by molecular dynamics simulation


JSON Export

{
  "metadata": {
    "edited_by": 576, 
    "owner": 1459, 
    "_oai": {
      "id": "oai:materialscloud.org:2315"
    }, 
    "description": "Calcium carbonate (CaCO\u2083) plays a crucial role in the global carbon cycle, and its phase diagram is of significant scientific interest. We used molecular dynamics to investigate selected structural phase transitions of calcium carbonate. Using the Raiteri potential, we explored the structural transitions occurring at the constant pressure of 1 bar, with temperatures ranging from 300 to 2500 K, and at the constant temperature of 1600 K, with pressures ranging from 0 to 13 GPa. With increasing temperature, the transitions between calcite, CaCO\u2083-IV, and CaCO\u2083-V were characterized. In the calcite structure, the carbonate ions are ordered in a planar triangular arrangement, alternating with layers of calcium ions. As the temperature increases, the transition from calcite to CaCO\u2083-IV occurs, leading to partial disordering of the carbonate ions. At higher temperatures, CaCO\u2083-IV transforms into CaCO\u2083-V. Through free energy analysis, we classified the latter transition as a continuous phase transition. At a temperature of 2000 K, a 'disordered CaCO\u2083' structure appears, characterized by low order within the calcium and carbonate sublattices and the free rotation of the carbonate ions. With increasing pressure, two calcium carbonate transformations were observed. At P = 2 GPa, the CaCO\u2083-V phase undergoes a phase transition into CaCO\u2083-IV, demonstrating that the model can describe the transition between these two phases as pressure- and temperature-driven. At P = 4.25 GPa, CaCO\u2083-IV undergoes a phase transition into the CaCO\u2083-Vb phase. This transition is classified as first-order based on free energy calculations.", 
    "mcid": "2024.126", 
    "id": "2315", 
    "license": "Creative Commons Attribution 4.0 International", 
    "license_addendum": null, 
    "references": [
      {
        "citation": "E. Sidler, R. Cabriolu, (2024). Structural transitions of calcium carbonate by molecular dynamics simulation. ArXiv. /abs/2408.04036", 
        "type": "Preprint", 
        "url": "https://doi.org/10.48550/arXiv.2408.04036", 
        "comment": "Preprint (arXiv)", 
        "doi": "10.48550/arXiv.2408.04036"
      }
    ], 
    "doi": "10.24435/materialscloud:ft-57", 
    "keywords": [
      "calcium carbonate", 
      "phase transitions", 
      "molecular dynamics", 
      "metadynamics", 
      "high pressure", 
      "high temperature"
    ], 
    "contributors": [
      {
        "affiliations": [
          "Department of Physics, Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen 5, Trondheim, 7491, Norway"
        ], 
        "familyname": "Sidler", 
        "email": "elizaveta.sidler@ntnu.no", 
        "givennames": "Elizaveta"
      }, 
      {
        "affiliations": [
          "Department of Physics, Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen 5, Trondheim, 7491, Norway"
        ], 
        "familyname": "Cabriolu", 
        "email": "raffaela.cabriolu@ntnu.no", 
        "givennames": "Raffaela"
      }
    ], 
    "conceptrecid": "2309", 
    "version": 2, 
    "publication_date": "Aug 21, 2024, 17:44:22", 
    "is_last": true, 
    "status": "published", 
    "_files": [
      {
        "size": 1243, 
        "checksum": "md5:60871f1afb5cc38dc5eabb769b8f9ae1", 
        "description": "Description of attached files", 
        "key": "README.txt"
      }, 
      {
        "size": 3128, 
        "checksum": "md5:0f457dc11b373715269051d2f3b7e4d6", 
        "description": "LAMMPS input file (molecular dynamics simulations at different temperatures and a pressure of 1 bar)", 
        "key": "in_temp.lammps"
      }, 
      {
        "size": 3149, 
        "checksum": "md5:92359248aecfd7fe741bccec47299bd1", 
        "description": "LAMMPS input file (molecular dynamics simulations at a temperature of 1600 K and different pressures)", 
        "key": "in_press.lammps"
      }, 
      {
        "size": 562532, 
        "checksum": "md5:eaeba29dce1ad2b8fdae88a2b0c8d7c0", 
        "description": "LAMMPS configuration file (system with 3360 particles equilibrated at a temperature of 300 K and a pressure of 1 bar)", 
        "key": "npt_T_300_Np_3360.data"
      }, 
      {
        "size": 1672129, 
        "checksum": "md5:942bfbce71eca05a7bb681f60ec05022", 
        "description": "LAMMPS configuration file (system with 9900 particles equilibrated at a temperature of 300 K and a pressure of 1 bar)", 
        "key": "npt_T_300_Np_9900.data"
      }, 
      {
        "size": 2481668, 
        "checksum": "md5:6c4347da8c6350e1763c3af21fd766a6", 
        "description": "LAMMPS configuration file (system with 14520 particles equilibrated at a temperature of 300 K and a pressure of 1 bar)", 
        "key": "npt_T_300_Np_14520.data"
      }, 
      {
        "size": 2624169, 
        "checksum": "md5:496658f1064fe4c314fc881b0238615b", 
        "description": "LAMMPS configuration file (system with 15360 particles equilibrated at a temperature of 1600 K and a pressure of 1 bar)", 
        "key": "npt_T_1600_Np_15360.data"
      }, 
      {
        "size": 1668437, 
        "checksum": "md5:dc82e58a85d994b910cda49e140e95e4", 
        "description": "LAMMPS configuration file of phase IV (system with 9900 particles equilibrated at a temperature of 1300 K and a pressure of 1 bar)", 
        "key": "npt_T_1300_IV.data"
      }, 
      {
        "size": 1668744, 
        "checksum": "md5:be8ed516efe1cb45b60d92b45bba41dc", 
        "description": "LAMMPS configuration file of phase V (system with 9900 particles equilibrated at a temperature of 1700 K and a pressure of 1 bar)", 
        "key": "npt_T_1700_V.data"
      }, 
      {
        "size": 1668131, 
        "checksum": "md5:207dc8f785823f7b1f6fa584ffb221ba", 
        "description": "LAMMPS configuration file of phase Vb (system with 9900 particles equilibrated at a temperature of 1600 K and a pressure of 6 GPa)", 
        "key": "npt_P_6_Vb.data"
      }, 
      {
        "size": 487, 
        "checksum": "md5:0f32696e157eeb53c4f9b9684d9b8992", 
        "description": "PLUMED input file (metadynamics simulations for temperature-driven transitions)", 
        "key": "plumed_temp.dat"
      }, 
      {
        "size": 497, 
        "checksum": "md5:6449c08e163c62cac23b10ba3d6b0254", 
        "description": "PLUMED input file (metadynamics simulations for pressure-driven transitions)", 
        "key": "plumed_press.dat"
      }, 
      {
        "size": 48413, 
        "checksum": "md5:813c0d9a4df4200b2d48cb7ec7bed1d5", 
        "description": "'index' file required by PLUMED", 
        "key": "index.ndx"
      }
    ], 
    "title": "Structural transitions of calcium carbonate by molecular dynamics simulation"
  }, 
  "id": "2315", 
  "updated": "2024-08-21T15:44:22.306267+00:00", 
  "created": "2024-08-21T14:42:06.920055+00:00", 
  "revision": 3
}