Dramatic acceleration of the Hopf cyclization on gold(111): from enediynes to unusual graphene nanoribbons

JSON Export

{
  "metadata": {
    "edited_by": 576, 
    "owner": 1118, 
    "_oai": {
      "id": "oai:materialscloud.org:1880"
    }, 
    "description": "Hopf et al. first reported the high-temperature 6\u03c0-electrocyclization of cis-hexa-1,3-diene-5-yne to benzene in 1969. Subsequent studies using this cyclization have been limited by its very high reaction barrier. Here, we show that the reaction barrier for two model systems, (E)-1,3,4,6-tetraphenyl-3-hexen-1,5-diyne (1a) and (E)-3,4-bis(4-iodophenyl)-1,6-diphenyl-3-hexen-1,5-diyne 1b, is decreased by nearly half on a Au(111) surface. In recent work, we have used scanning tunneling microscopy (STM) and non-contact atomic force microscopy (nc-AFM) to monitor the Hopf cyclization of enediynes 1a,b on Au(111). Enediyne 1a undergoes two sequential, quantitative Hopf cyclizations, first to naphthalene derivative 2, and finally to chrysene 3. Density functional theory (DFT) calculations reveal that a gold atom from the Au(111) surface is involved in all steps of this reaction, and that it is crucial to lowering the reaction barrier. Our findings have important implications for the synthesis of novel graphene nanoribbons. Ullman coupling of enediyne 1b at 20 \u02daC on Au(111), followed by a series of Hopf cyclizations and aromatization reactions at higher temperatures, produces nanoribbons 12, and eventually 13 upon further heating. These results show for the first time that graphene nanoribbons can be synthesized on-surface using the Hopf cyclization mechanism. This record contains all simulation data that support our scientific work.", 
    "mcid": "2024.75", 
    "id": "1880", 
    "license": "Creative Commons Attribution 4.0 International", 
    "license_addendum": null, 
    "references": [
      {
        "citation": "C. Zhao, D. D. Bhagwandin, W. Xu, P. Rufieux, C. A. Pignedoli, R. Fasel. and Y. Rubin, J. Am. Chem. Soc. 2024, 146, 4, 2474\u20132483", 
        "type": "Journal reference", 
        "comment": "Manuscript where the results are discussed", 
        "doi": "10.1021/jacs.3c10144"
      }
    ], 
    "doi": "10.24435/materialscloud:62-ew", 
    "keywords": [
      "MARVEL/P4", 
      "SNSF", 
      "CSCS", 
      "DFT", 
      "STM", 
      "nc-AFM", 
      "on surface synthesis"
    ], 
    "contributors": [
      {
        "affiliations": [
          "Swiss Federal Laboratories for Materials Science and Technology, D\u00fcbendorf, Switzerland"
        ], 
        "familyname": "Zhao", 
        "email": "chenxiao.zhao@emap.ch", 
        "givennames": "Chenxiao"
      }, 
      {
        "affiliations": [
          "Swiss Federal Laboratories for Materials Science and Technology, D\u00fcbendorf, Switzerland"
        ], 
        "familyname": "Pignedoli", 
        "email": "carlo.pignedoli@empa.ch", 
        "givennames": "Carlo A."
      }, 
      {
        "affiliations": [
          "Department of Chemistry and Biochemistry, University of California, Los Angeles"
        ], 
        "familyname": "Bhagwandin", 
        "givennames": "Dayanni D."
      }, 
      {
        "affiliations": [
          "Swiss Federal Laboratories for Materials Science and Technology, D\u00fcbendorf, Switzerland"
        ], 
        "familyname": "Xu", 
        "givennames": "Wangwei"
      }, 
      {
        "affiliations": [
          "Swiss Federal Laboratories for Materials Science and Technology, D\u00fcbendorf, Switzerland"
        ], 
        "familyname": "Rufieux", 
        "givennames": "Pascal"
      }, 
      {
        "affiliations": [
          "Swiss Federal Laboratories for Materials Science and Technology, D\u00fcbendorf, Switzerland", 
          "University of Bern, Bern, Switzerland"
        ], 
        "familyname": "Fasel", 
        "givennames": "Roman"
      }, 
      {
        "affiliations": [
          "Department of Chemistry and Biochemistry, University of California, Los Angeles"
        ], 
        "familyname": "Rubin", 
        "givennames": "Yves"
      }
    ], 
    "conceptrecid": "1879", 
    "version": 1, 
    "publication_date": "May 21, 2024, 16:16:34", 
    "is_last": true, 
    "status": "published", 
    "_files": [
      {
        "size": 27343, 
        "checksum": "md5:93a9a25052cd1800580a8db2027c55dc", 
        "description": "read me file in yaml format detailing the content of the archive", 
        "key": "ReadMe.yaml"
      }, 
      {
        "size": 28433156, 
        "checksum": "md5:fb3c6dad9cf51793866165eb4b8d106c", 
        "description": "compressed tar file containing all the files of the record", 
        "key": "data.tgz"
      }, 
      {
        "size": 1251379447, 
        "checksum": "md5:d5d8290cf4a95da0b9fd2080e176e03d", 
        "description": "archive of aiida notes containing all the calculations", 
        "key": "hopf.aiida"
      }
    ], 
    "title": "Dramatic acceleration of the Hopf cyclization on gold(111): from enediynes to unusual graphene nanoribbons"
  }, 
  "id": "1880", 
  "updated": "2024-05-21T14:16:34.310587+00:00", 
  "created": "2023-08-30T14:33:41.655305+00:00", 
  "revision": 3
}