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{ "revision": 6, "updated": "2023-04-04T14:17:42.479788+00:00", "created": "2023-01-24T16:17:16.980182+00:00", "id": "1626", "metadata": { "is_last": true, "title": "ReDD-COFFEE: A ready-to-use database of covalent organic framework structures and accurate force fields to enable high-throughput screenings", "conceptrecid": "1625", "edited_by": 910, "owner": 910, "references": [ { "url": "https://doi.org/10.1039/D3TA00470H", "type": "Journal reference", "citation": "J. S. De Vos, S. Borgmans, P. Van Der Voort, S. M. J. Rogge, V. Van Speybroeck, J. Mater. Chem. A 11, 7468-7487 (2023)", "doi": "10.1039/D3TA00470H" } ], "keywords": [ "covalent-organic frameworks", "COF structures", "force fields", "high-throughput", "optimized structures", "nanoporous" ], "description": "Covalent organic frameworks (COFs) are a versatile class of nanoporous materials that can be used for a broad range of applications. They possess strong covalent bonds and low densities. Owing to their building block nature, the number of hypothetical COFs envisioned by reticular synthesis is enormous. Since experimental screening is not possible, computational high-throughput screenings offer a valuable alternative to characterize the material space and speed-up materials discovery. These screening studies typically require a diverse materials database and accurate interatomic potentials to accurately predict the macroscopic behavior of each hypothetical COF. Here, we present ReDD-COFFEE, the Ready-to-use and Diverse Database of Covalent Organic Frameworks with Force field based Energy Evaluation. Our database contains 268 687 COFs and accompanying ab initio derived, system-specific force fields for each of them. We hope this database may inspire other researchers to further explore the potential of these intriguing functional materials.", "license_addendum": null, "contributors": [ { "familyname": "De Vos", "givennames": "Juul S.", "affiliations": [ "Center for Molecular Modeling (CMM), Ghent University, Technologiepark-Zwijnaarde 46, 9052 Zwijnaarde, Belgium" ] }, { "familyname": "Borgmans", "givennames": "Sander", "affiliations": [ "Center for Molecular Modeling (CMM), Ghent University, Technologiepark-Zwijnaarde 46, 9052 Zwijnaarde, Belgium" ] }, { "familyname": "Van Der Voort", "givennames": "Pascal", "affiliations": [ "Centre for Ordered Materials, Organometallics and Catalysis (COMOC), Ghent University, Krijgslaan 281 (S3), 9000 Ghent, Belgium" ] }, { "familyname": "Rogge", "givennames": "Sven M. J.", "email": "sven.rogge@ugent.be", "affiliations": [ "Center for Molecular Modeling (CMM), Ghent University, Technologiepark-Zwijnaarde 46, 9052 Zwijnaarde, Belgium" ] }, { "familyname": "Van Speybroeck", "givennames": "Veronique", "email": "veronique.vanspeybroeck@ugent.be", "affiliations": [ "Center for Molecular Modeling (CMM), Ghent University, Technologiepark-Zwijnaarde 46, 9052 Zwijnaarde, Belgium" ] } ], "status": "published", "mcid": "2023.13", "publication_date": "Jan 25, 2023, 10:53:23", "_files": [ { "size": 34727448, "key": "BoronateEster_2D.tar.xz", "checksum": "md5:febbdaa4fa5097f0448a55115f4bcb0a", "description": "Structure files of the 2D boronate ester COFs" }, { "size": 2033726752, "key": "BoronateEster_3D.tar.xz", "checksum": "md5:ae484d0face018a522beed80489dea06", "description": "Structure files of the 3D boronate ester COFs" }, { "size": 1510328, "key": "Boroxine_2D.tar.xz", "checksum": "md5:5b88f2429998c356568ea00018935c0d", "description": "Structure files of the 2D boroxine COFs" }, { "size": 60759612, "key": "Boroxine_3D.tar.xz", "checksum": "md5:f9a9973429dd1ee13dda8778e5aec40d", "description": "Structure files of the 3D boroxine COFs" }, { "size": 3419684, "key": "Borosilicate_2D.tar.xz", "checksum": "md5:50b7cbb9df5f6c726e9b51e25d6c66e8", "description": "Structure files of the 2D borosilicate COFs" }, { "size": 87848884, "key": "Borosilicate_3D.tar.xz", "checksum": "md5:d8f1905eed3a109481ae839702b5ca9e", "description": "Structure files of the 3D borosilicate COFs" }, { "size": 22391884, "key": "Imine_2D.tar.xz", "checksum": "md5:23cdbc69bd957617b275a9eccbadce9f", "description": "Structure files of the 2D imine COFs" }, { "size": 1145250400, "key": "Imine_3D.tar.xz", "checksum": "md5:985bd197d70ad921fc6a1cf06f790ddf", "description": "Structure files of the 3D imine COFs" }, { "size": 8249500, "key": "Acylhydrazone_2D.tar.xz", "checksum": "md5:13b8eee704c702496c89f8339c5387a1", "description": "Structure files of the 2D (acyl)hydrazone COFs" }, { "size": 2533351984, "key": "Acylhydrazone_3D.tar.xz", "checksum": "md5:0327a0d26456e51e68d555479c00b55f", "description": "Structure files of the 3D (acyl)hydrazone COFs" }, { "size": 44324536, "key": "Azine_2D.tar.xz", "checksum": "md5:1bc7d6d019cf65ab333097dd501c48b0", "description": "Structure files of the 2D azine COFs" }, { "size": 3229141112, "key": "Azine_3D.tar.xz", "checksum": "md5:abea270661c5d8df2e61b5a64898029c", "description": "Structure files of the 3D azine COFs" }, { "size": 54386544, "key": "Imide_2D.tar.xz", "checksum": "md5:c6adf4e591974d5b499dec1e5ae45e86", "description": "Structure files of the 2D imide COFs" }, { "size": 2310634252, "key": "Imide_3D.tar.xz", "checksum": "md5:adee6703467d383d3a7683eb38549d69", "description": "Structure files of the 3D imide COFs" }, { "size": 44918636, "key": "Oxazoline_2D.tar.xz", "checksum": "md5:0a270e43eef6312cf26e9344d176561b", "description": "Structure files of the 2D oxazoline COFs" }, { "size": 1988461380, "key": "Oxazoline_3D.tar.xz", "checksum": "md5:aabfe17e1ad4ae71df3989b9a4afafdf", "description": "Structure files of the 3D oxazoline COFs" }, { "size": 39465788, "key": "Ketoenamine_2D.tar.xz", "checksum": "md5:be811eb4d2c2cba22d633a623fc2c3c8", "description": "Structure files of the 2D (keto)enamine COFs" }, { "size": 2533792096, "key": "Ketoenamine_3D.tar.xz", "checksum": "md5:07ba7918be9610ddb31a781abe358b75", "description": "Structure files of the 3D (keto)enamine COFs" }, { "size": 3016792, "key": "Triazine_2D.tar.xz", "checksum": "md5:facebbfc44e369a4b5d7035343453ad3", "description": "Structure files of the 2D triazine COFs" }, { "size": 91397660, "key": "Triazine_3D.tar.xz", "checksum": "md5:83923462178b6412f5f58d86208c40df", "description": "Structure files of the 3D triazine COFs" }, { "size": 4386208, "key": "Borazine_2D.tar.xz", "checksum": "md5:37d8649ce8cbe52ad300d71a8f934e6a", "description": "Structure files of the 2D borazine COFs" }, { "size": 84738460, "key": "Borazine_3D.tar.xz", "checksum": "md5:4a4db340f0d68a382f377fd2d8345916", "description": "Structure files of the 3D borazine COFs" }, { "size": 6436821, "key": "pars.txt", "checksum": "md5:0f2f16bf7591ed613ff8625ae086f8bd", "description": "The ab initio derived, system-specific force field parameters for all structures" }, { "size": 18225045, "key": "sorted_maxmin.txt", "checksum": "md5:c7d5e03103dcd1069a2420b7f36e9587", "description": "Order of the structures obtained by a maxmin algorithm" }, { "size": 344, "key": "extract_subset.sh", "checksum": "md5:51b3efa6c39008f97b927bce23ddae0f", "description": "Post-processing script to extract a diverse subset" }, { "size": 9957, "key": "extract_pars.sh", "checksum": "md5:fcc2fad969aa4cac7a5304f7abc727a3", "description": "Post-processing script to extract force field parameters for one structure" }, { "size": 2438, "key": "write_to_cif.py", "checksum": "md5:694d197514977e9acfcef9065d97e88d", "description": "Post-processing script to convert chk file to cif format" }, { "size": 5849, "key": "logo.pdf", "checksum": "md5:0c76a839dd1f7537a956af0a2291f94a", "description": "Logo of the ReDD-COFFEE database" }, { "size": 46935, "key": "logo.png", "checksum": "md5:2293671fc35ce006aee2fbb7339d244d", "description": "Logo of the ReDD-COFFEE database" }, { "size": 3768, "key": "README.md", "checksum": "md5:dd7492dda0956a3ebe4966d2d6972442", "description": "Description of the ReDD-COFFEE database" } ], "license": "Creative Commons Attribution Non Commercial Share Alike 4.0 International", "_oai": { "id": "oai:materialscloud.org:1626" }, "version": 1, "doi": "10.24435/materialscloud:nw-3j", "id": "1626" } }