You are currently on a failover version of the Materials Cloud Archive hosted at CINECA, Italy.
Click here to access the main Materials Cloud Archive.
Note: If the link above redirects you to this page, it means that the Archive is currently offline due to maintenance. We will be back online as soon as possible.
This version is read-only: you can view published records and download files, but you cannot create new records or make changes to existing ones.

Published May 27, 2024 | Version v1
Dataset Open

Solvation free energies from machine learning molecular dynamics

  • 1. Theory and Simulation of Materials (THEOS), École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland

* Contact person

Description

In this paper, we propose an extension to the approach of [Xi, C; et al. J. Chem. Theory Comput. 2022, 18, 6878] to calculate ion solvation free energies from first-principles (FP) molecular dynamics (MD) simulations of a hybrid solvation model. The approach is first re-expressed within the quasi-chemical theory of solvation. Then, to allow for longer simulation times than the original first-principles molecular dynamics approach and thus improve the convergence of statistical averages at a fraction of the original computational cost, a machine-learned (ML) energy function is trained on FP energies and forces and used in the MD simulations. The ML workflow and MD simulation times (≈200 ps) are adjusted to converge the predicted solvation energies within a chemical accuracy of 0.04 eV. The extension is successfully benchmarked on the same set of alkaline and alkaline-earth ions. The record includes all molecular-dynamics trajectories, energies and forces used to obtain the solvation energies of alkaline and alkaline-earth ions in water, as reported in Table 2 of referenced paper.

Files

File preview

files_description.md

All files

Files (2.5 GiB)

Name Size
md5:44e71e29c84ac83f8787a2867ba89c6a
311 Bytes Preview Download
md5:29b2e63064a167602ffde561df889df6
2.5 GiB Preview Download
md5:4e3717bad64e1d6f49da299b4007dc72
384 Bytes Preview Download

References

Journal reference
N. Bonnet, N. Marzari, J. Chem. Theory Comput. (2024), doi: 10.1021/acs.jctc.4c00116